/**
 * PHOSIDE: PHosphorylation Site IDentification Engine.
 * Copyright 2009 Digital Biology Lab, University of Missouri.
 * This library is free software; you can redistribute it and/or modify it under
 * the terms of the GNU General Public License as published by the Free Software
 * Foundation; either version 3 of the License, or (at your option) any later
 * version. <p/> This library is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the License for more
 * details.
 */

package phoside.io.fasta;

import java.util.TreeSet;

import phoside.Protein;

/**
 *
 * @author gjj
 */
public interface ResidueAnnotator {

    public String annotate(Protein protein, int index);

    public TreeSet<Integer> indicesOfResidues(Protein protein);
}
